Journal Description
Diversity
Diversity
is a peer-reviewed, open access journal on the science of biodiversity from molecules, genes, populations, and species, to ecosystems and is published monthly online by MDPI.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubAg, GEOBASE, CAPlus / SciFinder, and other databases.
- Journal Rank: JCR - Q2 (Biodiversity Conservation) / CiteScore - Q2 (Agricultural and Biological Sciences (miscellaneous))
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 17.8 days after submission; acceptance to publication is undertaken in 2.8 days (median values for papers published in this journal in the second half of 2023).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
Impact Factor:
2.4 (2022);
5-Year Impact Factor:
2.5 (2022)
Latest Articles
Plastid Phylogenetics, Biogeography, and Character Evolution of the Chinese Endemic Genus Sinojackia Hu
Diversity 2024, 16(5), 305; https://doi.org/10.3390/d16050305 (registering DOI) - 18 May 2024
Abstract
Sinojackia Hu. comprises five to eight Chinese endemic species with high ornamental and medicinal value. However, the generic limits, interspecific relationships and evolutionary history of the genus remain unresolved. In this study, we newly sequenced three plastomes of S. oblongicarpa and compared them
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Sinojackia Hu. comprises five to eight Chinese endemic species with high ornamental and medicinal value. However, the generic limits, interspecific relationships and evolutionary history of the genus remain unresolved. In this study, we newly sequenced three plastomes of S. oblongicarpa and compared them with those of the other congeneric species to explore the taxonomic delimitation of the species and the evolutionary history of the genus. The plastome structure of Sinojackia species was extremely conserved in terms of number of genes, sequence length, and GC content. The codon usage patterns revealed that natural selection may be the main factor shaping codon usage bias. Our phylogenetic tree shows that Sinojackia is monophyletic and can be divided into two clades. Sinojackia oblongicarpa as a distinct species is supported for it is distantly related to S. sarcocarpa. The evolutionary analysis of morphological features indicates that the woody mesocarp is an ancestral feature. Sinojackia originated in central Southeast China during the early Miocene. In this period, it experienced elevated diversification and migrated from central Southeast China to the Hunan Province and the Sichuan Province with the development of the Asian monsoon and East Asian flora. Glacial–interglacial interactions with the monsoon climate may provide favorable expansion conditions for Sinojackia on a small scale.
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(This article belongs to the Special Issue Diversity in 2024)
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How Do Zooplankton Communities Respond to Environmental Factors across the Subsidence Wetlands Created by Underground Coal Mining in the North China Plain?
by
Yue Liang, Jianjun Huo, Weiqiang Li, Yutao Wang, Guangyao Wang and Chunlin Li
Diversity 2024, 16(5), 304; https://doi.org/10.3390/d16050304 - 17 May 2024
Abstract
The degradation and loss of natural wetlands has caused severe crises for wetland taxa. Meanwhile, constructed wetlands are expanding significantly and facing dramatic environmental changes. Exploring the responses of wetland organisms, particularly zooplankton, may have important implications for the management of wetlands. Environmental
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The degradation and loss of natural wetlands has caused severe crises for wetland taxa. Meanwhile, constructed wetlands are expanding significantly and facing dramatic environmental changes. Exploring the responses of wetland organisms, particularly zooplankton, may have important implications for the management of wetlands. Environmental and zooplankton samples were collected from 34 subsidence wetlands created by underground coal mining across the North China Plain in August 2021. We used generalized linear models and redundancy analysis to test zooplankton responses to environmental variables, with the relative importance quantified by variation partitioning. We identified 91 species, divided into 7 functional groups, with the highest density of rotifer filter feeders (RF, 2243.4 ± 499.4 ind./L). Zooplankton species richness was negatively correlated with electrical conductivity (EC), chlorophyll-a, total phosphorus, and pH. The Shannon–Weiner and Pielou evenness indices were positively correlated with transparency and negatively correlated with the photovoltaic panel area (AS). Rotifer predators (RCs) and RF densities were positively correlated with cropland area and dissolved oxygen, but negatively correlated with AS. Small crustacean filter feeders positively correlated with AS, whereas medium crustacean feeders (MCFs) positively correlated with EC. AS was the most critical variable affecting the zooplankton community. Our study showed that the spatial pattern of zooplankton communities was shaped by environmental heterogeneity across the subsidence wetlands, providing implications for the management and conservation of these constructed wetlands.
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(This article belongs to the Section Freshwater Biodiversity)
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Two New Species of Hymenogaster (Hymenogastraceae, Agaricales) from China Based on Morphological and Molecular Markers
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Ting Li, Ning Mao, Haoyu Fu, Yuxin Zhang and Li Fan
Diversity 2024, 16(5), 303; https://doi.org/10.3390/d16050303 - 17 May 2024
Abstract
Two new species from China, Hymenogaster pseudoniveus and H. zunhuaensis, are described and illustrated based on morphological and molecular evidence. Hymenogaster pseudoniveus is distinguished from other species of the genus based on the color of peridium, which is snow white to
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Two new species from China, Hymenogaster pseudoniveus and H. zunhuaensis, are described and illustrated based on morphological and molecular evidence. Hymenogaster pseudoniveus is distinguished from other species of the genus based on the color of peridium, which is snow white to white when unexcavated but then turns yellowish to earth yellow, and the basidiospores, which are ornamented with nearly longitudinally arranged ridges up to 2 μm high. H. zunhuaensis is diagnosed by its dirty white to pale yellow peridium, yellow brown to brown gleba, and the smaller (Lm × Wm = 11.7 μm × 9.8 μm) broadly ellipsoidal to subglobose basidiospores (Q = 1.1–1.3). ITS/LSU-based phylogenetic analysis supports the erection of the two new species, each placed in distinct clades with strong statistical support, suggesting that they represent two distinct species novel to science. Based on the morphological and molecular evidence, we have published two new species of Hymenogaster. A key for Hymenogaster species from China is provided.
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Open AccessArticle
First Account of Epibiotic Diatom Taxa from the Carapaces of Green Swimming Crab Callinectes bellicosus (Stimpson 1859) (Decapoda, Portunidae)
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Francisco Omar López-Fuerte, David Alfaro Siqueiros Beltrones, Luis Hernández and Sergio Flores-Ramírez
Diversity 2024, 16(5), 302; https://doi.org/10.3390/d16050302 - 17 May 2024
Abstract
Diatoms are among the most common epibionts and have been recorded on the surfaces of various living substrates, either plants or animals. However, studies on them are still scarce in view of the many substrata available. In this study, epibiotic diatoms living on
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Diatoms are among the most common epibionts and have been recorded on the surfaces of various living substrates, either plants or animals. However, studies on them are still scarce in view of the many substrata available. In this study, epibiotic diatoms living on Callinectes bellicosus were identified for the first time from a subtropical coastal lagoon in Northwest Mexico. We tested the null hypothesis that the diatom flora living on the carapaces of C. bellicosus would not be similar to that recorded for mangrove sediments, its typical habitat. The epibiotic diatoms were brushed off from the carapaces of two specimens, acid-cleaned, mounted in synthetic resin, and identified based on frustule morphology. This way, 106 taxa from 46 genera were recorded, including 25 singletons, and 6 new records for the Mexican northwest region. The best-represented genera were Nitzschia (10 taxa), Mastogloia (9), Diploneis (8), Navicula (7), Amphora (5), Cocconeis (5), Tryblionella (4), and Gyrosigma (4). Species composition included 93% of local taxa, thus refuting the proposed hypothesis and supporting the alternate one. Although the estimated species richness was lower than that in sediments, it deems the green crab carapace a favorable substrate for the growth of benthic diatoms.
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(This article belongs to the Section Marine Diversity)
Open AccessArticle
Population Status and Conservation of the Largest Population of the Endangered François’ Langur (Trachypithecus francoisi) in Vietnam
by
Tu A. Le, Anh T. Nguyen, Trung S. Le, Tuan A. Le and Minh D. Le
Diversity 2024, 16(5), 301; https://doi.org/10.3390/d16050301 - 17 May 2024
Abstract
François’ langur is an Endangered colobine inhabiting limestone habitats in southern China and northern Vietnam. Its global population has been estimated to be just more than 2000 mature individuals. Populations in Vietnam are highly fragmented with reportedly fewer than 200 adults in total
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François’ langur is an Endangered colobine inhabiting limestone habitats in southern China and northern Vietnam. Its global population has been estimated to be just more than 2000 mature individuals. Populations in Vietnam are highly fragmented with reportedly fewer than 200 adults in total and 50 in a single location. Although the François’ langur in Vietnam is highly imperiled as remnant populations persist in only three to four sites, little research has been carried out to provide a reliable estimate of its remaining population. In this study, we conducted field surveys in Lam Binh District, Tuyen Quang Province, northeastern Vietnam. In total, we recorded at least 16 groups of François’ langurs, with 156 individuals, raising the total number of individuals by approximately 10% compared to a previous study. The group structure, group size, activity budget, and density of the Lam Binh population resemble those reported in François’ langurs in China and other limestone langur species. The results show that the behavior ecology of limestone langurs significantly differs from that of forest langurs probably because they occupy separate habitats with distinctly different environmental variables. During our surveys, we detected a number of direct threats to this population, namely illegal logging, hunting, firewood collecting, hydropower development, grazing, and mining. It is recommended that the protection forest be elevated to the nature reserve status to better protect the most important population of the François’ langur in Vietnam.
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(This article belongs to the Special Issue Ecology, Conservation and Restoration of Threatened Animal)
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Application of Machine Learning in Ecological Red Line Identification: A Case Study of Chengdu–Chongqing Urban Agglomeration
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Juan Deng, Yu Xie, Ruilong Wei, Chengming Ye and Huajun Wang
Diversity 2024, 16(5), 300; https://doi.org/10.3390/d16050300 - 16 May 2024
Abstract
China’s Ecological Protection Red Lines (ERLs) policy has proven effective in constructing regional ecological security patterns and protecting ecological space. However, the existing methods for the identification of high conservation value areas (HCVAs) usually use physical models, whose parameters and processes are complex
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China’s Ecological Protection Red Lines (ERLs) policy has proven effective in constructing regional ecological security patterns and protecting ecological space. However, the existing methods for the identification of high conservation value areas (HCVAs) usually use physical models, whose parameters and processes are complex and only for a single service, affecting the ERL delineation. In this study, the data-driven machine learning (ML) models were innovatively applied to construct a framework for ERL identification. First, the One-Class Support Vector Machine (OC-SVM) was used to generate negative samples from natural reserves and ecological factors. Second, the supervised ML models were applied to predict the HCVAs by using samples. Third, by applying the same ecological factors, the traditional physical models were used to assess the ecological services of the study area for reference and comparison. Take Chengdu–Chongqing Urban Agglomeration (CY) as a case study, wherein data from 11 factors and 1822 nature reserve samples were prepared for feasibility verification of the proposed framework. The results showed that the area under the receiver operating characteristic curve (AUC) of all ML models was more than 97%, and random forest (RF) achieved the best performance at 99.57%. Furthermore, the land cover had great contributions to the HCVAs prediction, which is consistent with the land use pattern of CY. High-value areas are distributed in the surrounding mountains of CY, with lush vegetation. All of the above results indicated that the proposed framework can accurately identify HCVAs, and that it is more suitable and simpler than the traditional physical model. It can help improve the effectiveness of ERL delimitation and promote the implementation of ERL policies.
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(This article belongs to the Special Issue The Applications of Artificial Intelligence on the Conservation of Biodiversity)
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An Overlooked Group of Citizen Scientists in Non-Indigenous Species (NIS) Information: Shell Collectors and Their Contribution to Molluscan NIS Xenodiversity
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Argyro Zenetos, Christiane Delongueville and Roland Scaillet
Diversity 2024, 16(5), 299; https://doi.org/10.3390/d16050299 - 16 May 2024
Abstract
This work reports on 60 marine alien mollusks from nine countries across the Mediterranean Sea and the Sea of Marmara collected by two Belgian citizen scientists. Some of their published observations concerning collection dates are compared with the year of first publication for
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This work reports on 60 marine alien mollusks from nine countries across the Mediterranean Sea and the Sea of Marmara collected by two Belgian citizen scientists. Some of their published observations concerning collection dates are compared with the year of first publication for these alien mollusks reported in the literature, which enable us to backdate some of their introductions and set new first Mediterranean records for two species. This underlines the importance of collaboration between volunteers and institutional scientists in tracing variations and changes in the environment and biodiversity.
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(This article belongs to the Special Issue 2024 Feature Papers by Diversity’s Editorial Board Members)
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The Effect of Ficus semicordata Fig Quality on the Sex Ratio of Its Pollinating Wasp Ceratosolen gravelyi
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Xiaoyan Yang, Yunfang Guan, Changqi Chen, Ying Zhang, Yulin Yuan, Tiantian Tang, Zongbo Li and Yuan Zhang
Diversity 2024, 16(5), 298; https://doi.org/10.3390/d16050298 - 15 May 2024
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The interaction between fig wasps and their host fig trees (Ficus spp.) is a striking example of an obligate pollination mutualism. Male and female fig wasps are confined within their natal patch instead of panmictic; under this circumstance, mating only occurs between
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The interaction between fig wasps and their host fig trees (Ficus spp.) is a striking example of an obligate pollination mutualism. Male and female fig wasps are confined within their natal patch instead of panmictic; under this circumstance, mating only occurs between individuals of the same patch. This is known as a local mate competition (LMC). It pays foundresses to invest mainly in daughters and to only produce enough sons to ensure that all female offspring can be fertilized, but in nature, pollinating fig wasps may face many problems with host quality, such as limitation of oviposition sites and the nutrition deficiency of the host fig. The sex ratio of wasps can determine the stability of fig–fig wasp mutualistic system and, thus, the stability of other species associated with it. In this study, we controlled the quality of host figs in three ways. The results showed that the host fig age can influence the sex ratio of pollinator offspring, while the foundress numbers and the presence of pollen have no significant effect on it. A compelling explanation for this result is that the sex-dependent mortality occurs. This is a novel finding of how host quality influences the interaction of fig and fig wasps, which can also help us understand the evolution and stability mechanism of this symbiotic system.
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New Updates on the Distribution of Scapania umbrosa (Schrad.) Dumort. (Scapaniaceae, Marchantiophyta) in Pacific Asia
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Ksenia G. Klimova, Yulia D. Maltseva, Vadim A. Bakalin and Seung Se Choi
Diversity 2024, 16(5), 297; https://doi.org/10.3390/d16050297 - 15 May 2024
Abstract
The distribution of liverworts in the North Pacific is still poorly understood. Scapania umbrosa, which is rare in Asia, was first recorded during the study of the liverwort flora of the Commander Islands (the westernmost Aleutians). The results of the molecular genetic
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The distribution of liverworts in the North Pacific is still poorly understood. Scapania umbrosa, which is rare in Asia, was first recorded during the study of the liverwort flora of the Commander Islands (the westernmost Aleutians). The results of the molecular genetic analysis not only confirmed that the specimen belonged to Scapania umbrosa but also demonstrated the genetic specificity of the discovered population in comparison with the European, Siberian, and Alaskan populations. The island population of Scapania umbrosa is likely a recently diverged isolate of the species. Previously reported data on the distribution of Scapania umbrosa in the Russian Far East from Kamchatka and Kunashir (VBGI Herbarium), as well as from Sakhalin and Southern Primorye (reported in GBIF), are based on misidentifications. Morphological descriptions, distinguishing characters, line drawings, and photographs of Scapania umbrosa based on the collected material are provided.
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(This article belongs to the Section Plant Diversity)
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A Rather Unusual ”Pearl”: Biological Observations of the Hidden Pearlfish Carapus acus (Brünnich, 1768) and Its First Report from Apulian Waters (Salento Peninsula, Southern Italy)
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Alessandra Martines, Michele Solca, Egidio Trainito, Stefano Piraino and Giulia Furfaro
Diversity 2024, 16(5), 296; https://doi.org/10.3390/d16050296 - 14 May 2024
Abstract
The Salento peninsula in southern Italy (Mediterranean Sea) is a strip of land between the Adriatic and the Ionian Seas, both characterized by local regimes of currents, different geological and physical backgrounds, and quite diversified fauna. In this area, specimens of the sea
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The Salento peninsula in southern Italy (Mediterranean Sea) is a strip of land between the Adriatic and the Ionian Seas, both characterized by local regimes of currents, different geological and physical backgrounds, and quite diversified fauna. In this area, specimens of the sea cucumber Holothuria tubulosa (Brünnich, 1768) (Echinodermata) were collected at four stations in the spring and autumn of 2020 to investigate a possible symbiotic association with the inquiline fish Carapus acus (Brünnich, 1768). Among the collected holothurians, five pearlfish specimens were found in the body cavity of four H. tubulosa collected at 10 m of depth, in autumn, at “Grotta Verde” in Marina di Andrano, Lecce (Ionian Sea). More than half of the sea cucumbers from the latter station hosted the symbiont, suggesting the presence of a shallow population of C. acus inhabiting this coastal area. Furthermore, morphometric analysis carried out on the collected fish helped to shed light on the population dynamics characterizing this neglected species. This is the first report of C. acus from Apulian waters, allowing us to unite previously disjoined areas and providing essential baseline knowledge for planning future in-depth analysis of this difficult-to-study fish in a geographical area that is strategic in terms of the conservation of Mediterranean biodiversity. Furthermore, the range of preferred host species is extended, as C. acus was previously known to prefer other sea cucumber species such as Parastichopus regalis (Cuvier, 1817) instead of H. tubulosa. Finally, the finding of C. acus in a single station and in only one season is not trivial and delivers baseline useful information for future conservation purposes.
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(This article belongs to the Special Issue 2024 Feature Papers by Diversity’s Editorial Board Members)
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Stony Corals and Their Associated Fauna Residing in Marine Lakes under Extreme Environmental Conditions
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Leontine E. Becking, Stephanie J. Martinez, Ludi Parwadani Aji, Awaludinnoer Ahmad, Adriana Alzate, Mainah Folkers, Dea Fauzia Lestari, Beginer Subhan and Bert W. Hoeksema
Diversity 2024, 16(5), 295; https://doi.org/10.3390/d16050295 - 13 May 2024
Abstract
Tropical marine lakes are small land-locked marine waterbodies occurring in karstic coastal areas. During biodiversity surveys in 12 marine lakes in Raja Ampat, Southwest Papua province, Indonesia, we recorded at least 37 species belonging to 29 genera of hard corals. Their observed associated
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Tropical marine lakes are small land-locked marine waterbodies occurring in karstic coastal areas. During biodiversity surveys in 12 marine lakes in Raja Ampat, Southwest Papua province, Indonesia, we recorded at least 37 species belonging to 29 genera of hard corals. Their observed associated symbiont fauna consisted of bivalve molluscs and polychaete worms. Marine lake temperature ranged from 30.0 to 32.5 °C, acidity from pH 7.6 to 8.1, and salinity from 26.4 to 33.2 ppt. This study provides the first inventory of the marginal coral communities in the extreme habitat of marine lakes, under chronic extreme environmental conditions of higher temperatures, land-based nutrient loads, and sedimentation.
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(This article belongs to the Collection Interesting Images from the Sea)
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Diversity of Pleurostomatid Ciliates: Morphology, Taxonomy and Molecular Phylogeny of Freshwater Isolates Found in a Northern China Wetland, with a Description of Two New Species
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Gongaote Zhang, Yongqiang Liu, Hongbo Pan, Yujie Liu, Honggang Ma, Zhe Wang, Khaled A. S. Al-Rasheid, Weibo Song and Hunter N. Hines
Diversity 2024, 16(5), 294; https://doi.org/10.3390/d16050294 - 11 May 2024
Abstract
Ciliates of the order Pleurostomatida play essential functions in microbial food webs from a variety of habitats and have been thought to possess a high level of diversity. Due to undersampling and often absent molecular data, the actual diversity and phylogenetic relationships within
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Ciliates of the order Pleurostomatida play essential functions in microbial food webs from a variety of habitats and have been thought to possess a high level of diversity. Due to undersampling and often absent molecular data, the actual diversity and phylogenetic relationships within this group remain unclarified. To help address this deficiency, a survey of freshwater pleurostomatid ciliates was undertaken in Lake Weishan Wetland, northern China. Here, two new Amphileptus species, Amphileptus sinicus sp. nov. and Amphileptus piscinarius sp. nov., were investigated using modern morphological and molecular techniques. Amphileptus sinicus sp. nov. is characterized by possessing a comparatively large cell size of 330–490 μm, contractile vacuoles on both ventral and dorsal margins, and 8–10 left and 42–61 right kineties. Amphileptus piscinarius sp. nov. is characterized by possessing a cell size of 140–210 μm, a large distinctly developed apical extrusome group, 3–4 contractile vacuoles on the ventral margin, and 6–8 left and 24–28 right kineties. Phylogenetic results based on the 18S rRNA gene data of these two species group them with other congeners, with these data suggesting the genus Amphileptus is paraphyletic.
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(This article belongs to the Special Issue Diversity, Ecology and Genetics of Ciliates)
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Coastal Eukaryotic Plankton Diversity of the Southern Adriatic as Revealed by Metabarcoding
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Ana Baricevic, Tjasa Kogovsek, Mirta Smodlaka Tankovic, Lana Grizancic, Mia Knjaz, Ivan Vlasicek, Ivan Podolsak, Natasa Kuzat, Martin Pfannkuchen and Daniela Maric Pfannkuchen
Diversity 2024, 16(5), 293; https://doi.org/10.3390/d16050293 - 11 May 2024
Abstract
Plankton studies serve as a basis for marine ecosystem research, but knowledge of marine plankton is still incomplete due to its extreme taxonomic and functional complexity. The application of metabarcoding is very valuable for the characterisation of the plankton community. The plankton community
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Plankton studies serve as a basis for marine ecosystem research, but knowledge of marine plankton is still incomplete due to its extreme taxonomic and functional complexity. The application of metabarcoding is very valuable for the characterisation of the plankton community. The plankton community of the Southern Adriatic is subject to strong environmental fluctuations and changes, which underlines the need for frequent, reliable and comprehensive characterisation of the plankton. The aim of this study was to determine the taxonomic composition and seasonal distribution of eukaryotic plankton in the Southern Adriatic. Plankton samples were collected monthly for one year at the coastal station of the Southern Adriatic and metabarcoding was used for taxonomic identification. The results showed a high taxonomic diversity and dynamic seasonal distribution patterns for both the protist and metazoan plankton communities. Metabarcoding revealed both the core, year-round plankton community and previously unrecorded plankton organisms in the Southern Adriatic. The results provide for the first time a comprehensive overview of the plankton community in this area by metabarcoding. The identified seasonal patterns of plankton genera and species in the Southern Adriatic will contribute to the understanding of plankton interactions and future changes in community diversity characterisation.
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(This article belongs to the Special Issue Biodiversity and Ecology in the Mediterranean Sea)
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Genome-Based Classification of Pedobacter albus sp. nov. and Pedobacter flavus sp. nov. Isolated from Soil
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Nhan Le Thi Tuyet and Jaisoo Kim
Diversity 2024, 16(5), 292; https://doi.org/10.3390/d16050292 - 11 May 2024
Abstract
Two rod-shaped, non-spore-forming, Gram-negative bacteria, strain KR3-3T isolated from fresh soil in Korea and strain VNH31T obtained from soil samples from motorbike repair workshop floors in Vietnam, were identified. Phylogenetic analysis utilizing 16S rRNA gene sequences revealed their affiliation with the
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Two rod-shaped, non-spore-forming, Gram-negative bacteria, strain KR3-3T isolated from fresh soil in Korea and strain VNH31T obtained from soil samples from motorbike repair workshop floors in Vietnam, were identified. Phylogenetic analysis utilizing 16S rRNA gene sequences revealed their affiliation with the family Sphingobacteriaceae and their relation to the genus Pedobacter, exhibiting 16S rRNA gene sequence similarities lower than 98.00% with all known species within the genus Pedobacter. Growth of VNH31T and KR3-3T was impeded by NaCl concentrations exceeding >0.5% and 1.5%, respectively, while they both thrived optimally at temperatures ranging between 25 and 30 °C. Notably, neither strain reduced nitrate to nitrite nor produced indole. Negative results were observed for the acidification of D-glucose and hydrolysis of urea, gelatin, casein, and starch. VNH31T exhibited growth on β-galactosidase, sodium acetate, L-serine, and L-proline, whereas KR 3-3T demonstrated growth on D-glucose, D-mannose, D-maltose, N-acetyl-glucosamine, sucrose, sodium acetate, L-serine, 4-Hydroxybenzoic acid, and L-proline. Core genome-based phylogenetic analysis revealed that the two isolates formed distinct clusters within the genus Pedobacter. The DNA G+C contents of KR3-3T and VNH31T were determined to be 44.12 mol% and 32.96 mol%, respectively. The average nucleotide identity and in silico DNA-DNA hybridization relatedness values (67.19–74.19% and 17.6–23.6%, respectively) between the Pedobacter isolates and the closely related type strains fell below the threshold values utilized for species delineation. Following comprehensive genomic, chemotaxonomic, phenotypic, and phylogenetic analyses, the isolated strains are proposed as two novel species within the genus Pedobacter, named Pedobacter albus sp. nov. (type strain KR3-3T = KACC 23486T = NBRC 116682T) and Pedobacter flavus sp. nov. (type strain VNH31T = KACC 23297T = CCTCC AB 2023109T).
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(This article belongs to the Special Issue Microbial Diversity and Culture Collections Hotspots in 2024)
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Interannual Variation in the Zooplankton Community of the North Adriatic Sea under Short-Term Climatic Anomalies
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Samuele Menicucci, Andrea De Felice, Ilaria Biagiotti, Giovanni Canduci, Ilaria Costantini, Antonio Palermino, Michele Centurelli and Iole Leonori
Diversity 2024, 16(5), 291; https://doi.org/10.3390/d16050291 - 11 May 2024
Abstract
Zooplankton are a pivotal component of the pelagic community, and their abundance and distribution are often strongly dependent on environmental conditions at sea. However, climate change can pose significant challenges to planktonic organisms. Therefore, in this study, we tried to address the possible
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Zooplankton are a pivotal component of the pelagic community, and their abundance and distribution are often strongly dependent on environmental conditions at sea. However, climate change can pose significant challenges to planktonic organisms. Therefore, in this study, we tried to address the possible effect of short-term climatic anomalies on the zooplankton community in the North Adriatic Sea, comparing mesozooplankton composition in June between two years with very different temperature and rainfall levels, i.e., 2019 and 2022. Environmental conditions at sea were significantly different, since 2022 faced rising temperatures in the northern part of the area and higher salinity and lower chlorophyll values in coastal samples. Our data unveiled a community shift, from a Noctiluca-dominated community to a crustacean-dominated one, and revealed that even offshore areas can be subject to changes, despite having quite stable environmental parameters. Our findings confirmed the influence of river inputs and temperature on the Adriatic community’s distribution and composition, highlighting how climate-driven changes could have unpredictable effects on the whole Adriatic ecosystem. Indeed, each species has its own role in ecosystem functioning and climatic anomalies could uncouple the fine-scale connections that make up the pelagic trophic web.
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(This article belongs to the Special Issue Biodiversity and Ecology in the Mediterranean Sea)
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Callovian Marine Reptiles of European Russia
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Nikolay Zverkov, Maxim Arkhangelsky, Denis Gulyaev, Alexey Ippolitov and Alexey Shmakov
Diversity 2024, 16(5), 290; https://doi.org/10.3390/d16050290 - 10 May 2024
Abstract
Our knowledge of marine reptiles of the Callovian age (Middle Jurassic) is majorly based on the collections from the Oxford Clay Formation of England, which yielded a diverse marine reptile fauna of plesiosaurians, ichthyosaurians, and thalattosuchians. However, outside of Western Europe, marine reptile
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Our knowledge of marine reptiles of the Callovian age (Middle Jurassic) is majorly based on the collections from the Oxford Clay Formation of England, which yielded a diverse marine reptile fauna of plesiosaurians, ichthyosaurians, and thalattosuchians. However, outside of Western Europe, marine reptile remains of this age are poorly known. Here, we survey marine reptiles from the Callovian stage of European Russia. The fossils collected over more than a century from 28 localities are largely represented by isolated bones and teeth, although partial skeletons are also known. In addition to the previously described rhomaleosaurid and metriorhynchids, we identify pliosaurids of the genera Liopleurodon and Simolestes; cryptoclidid plesiosaurians, including Cryptoclidus eurymerus, Muraenosaurus sp., and cf. Tricleidus, and ophthalmosaurid ichthyosaurians, including the iconic Ophthalmosaurus icenicus. These findings expand the ranges of several Callovian marine reptile taxa far to the Eastern Europe, and support the exchange of marine reptile faunas between Western and Eastern European seas in the middle to late Callovian. However, some specimens from the lower Callovian of European Russia show differences from typical representatives of the middle Callovian Oxford Clay fauna, possibly representing the earlier stages of evolution of some of these marine reptiles not yet recorded in Western Europe or elsewhere.
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(This article belongs to the Special Issue Making New Out of the Old: Recent Biological Advances on Mesozoic Marine Reptiles)
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Open AccessArticle
Unraveling Functional Diversity Patterns in Hyporheic Zones: A Trait-Based Approach Applied to Copepods from the Rio Gamberale Creek
by
Agostina Tabilio Di Camillo, Francesco Cerasoli, Mattia Di Cicco, Diana Maria Paola Galassi and Tiziana Di Lorenzo
Diversity 2024, 16(5), 289; https://doi.org/10.3390/d16050289 - 10 May 2024
Abstract
Despite the recognized ecological significance of hyporheic zones, biological investigations into their ecology, especially concerning functional diversity, remain limited. This is particularly true for copepod assemblages, abundant in the transitional zone between groundwater and surface waters, requiring more thorough exploration. To bridge this
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Despite the recognized ecological significance of hyporheic zones, biological investigations into their ecology, especially concerning functional diversity, remain limited. This is particularly true for copepod assemblages, abundant in the transitional zone between groundwater and surface waters, requiring more thorough exploration. To bridge this knowledge gap, our study extensively monitored a hyporheic zone within a mountain creek and examined nine functional traits across twelve copepod species found in this environment. Through the application of RLQ and fourth-corner analysis, as well as functional diversity indices including functional richness, evenness, divergence, and dispersion, we aimed to establish links between functional traits and environmental factors. Our findings revealed relationships between environmental features—specifically electrical conductivity, pH, and ammonium concentration—and the trait composition of copepod assemblages, which were influenced by species abundances. Considering the intimate connection between functional traits and ecosystem services, assessing functional diversity within hyporheic zones offers valuable insights into its functionality in terms of services rendered. This study emphasizes the importance of understanding and managing functional diversity in hyporheic zone dynamics to ensure the health and stability of ecotones and, by extension, riverine and groundwater ecosystems.
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(This article belongs to the Special Issue Ecotones as Diversity Drivers: New Research Perspective from Boundaries and Border Habitats)
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Open AccessArticle
Diversity of Freshwater Calanoid Copepods (Crustacea: Copepoda: Calanoida) in North-Eastern China
by
Ruirui Ding, Le Liu, Shusen Shu, Yun Li and Feizhou Chen
Diversity 2024, 16(5), 288; https://doi.org/10.3390/d16050288 - 10 May 2024
Abstract
The distribution and diversity of calanoid copepods were investigated using samples collected from 37 lakes in North-eastern (NE) China in 2019. A total of 10 calanoid copepods belonging to eight genera and three families were identified. Among them, Heterocope soldatovi Rylov, 1922 was
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The distribution and diversity of calanoid copepods were investigated using samples collected from 37 lakes in North-eastern (NE) China in 2019. A total of 10 calanoid copepods belonging to eight genera and three families were identified. Among them, Heterocope soldatovi Rylov, 1922 was recorded for the first time in China. Species from the family Centropagidae were more widespread than those from the families Temoridae and Diaptomidae. Sinocalanus doerrii (Brehm, 1909), previously not recorded in NE China, is now widespread alongside Boeckella triarticulata (Thomson G.M., 1883), and the latter species is also prevalent in that region. Canonical correspondence analysis (CCA) and redundancy analysis (RDA) revealed that calanoid copepods were significantly correlated with total phosphorus (TP), total nitrogen, conductivity, nitrate nitrogen, altitude, and dissolved organic carbon. TP was the most important environmental variable that impacted the distribution of calanoid copepods, including both fresh and saline–alkaline lakes. Integrating historical records, a total of 21 calanoid copepods were distributed in NE China, and we also gave comments on the ecology and distribution of these species.
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(This article belongs to the Section Freshwater Biodiversity)
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Open AccessArticle
A New Species and a New Record of Byssoid Arthoniaceae (Lichenized Ascomycota) from Southern China
by
Lulu Zhang, Junxia Xue and Linlin Liu
Diversity 2024, 16(5), 287; https://doi.org/10.3390/d16050287 - 10 May 2024
Abstract
This paper illustrates two species in the lichen-forming family Arthoniaceae from southern China, including a new species of Herpothallon, H. fibrosum L.L. Liu & Lu L. Zhang and a new record of Cryptothecia, C. striata G. Thor for China. Herpothallon fibrosum
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This paper illustrates two species in the lichen-forming family Arthoniaceae from southern China, including a new species of Herpothallon, H. fibrosum L.L. Liu & Lu L. Zhang and a new record of Cryptothecia, C. striata G. Thor for China. Herpothallon fibrosum has fluffy, cylindrical pseudoisidia, like a bundle of fiber, and psoromic acid and confluentic acid are present. Furthermore, the new record of Cryptothecia striata has been identified by morphological, anatomical, chemical, and molecular studies. The systematic position of the two species was clarified by the molecular sequence data from the small subunit of the mitochondrial ribosomal DNA (mtSSU). Detailed taxonomic descriptions, chemical characters, comparisons, and discussion of the characteristics of similar species are provided for the two species; the relationship between Cryptothecia and Herpothallon is also discussed here.
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(This article belongs to the Special Issue Phylogeny, Taxonomy and Ecosystems of Lichens)
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Open AccessArticle
Diplostomum cf. vanelli Yamaguti, 1935 (Trematoda: Diplostomidae Poirier, 1886): Morpho-Molecular Data and Life Cycle
by
Anna V. Izrailskaia, Vladimir V. Besprozvannykh and Michael Yu. Shchelkanov
Diversity 2024, 16(5), 286; https://doi.org/10.3390/d16050286 - 10 May 2024
Abstract
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Furcocercariae, of the trematodes from the family Diplostomidae, were found in freshwater snails—Radix auricularia, which were collected in a reservoir located on Popov Island (Peter the Great Bay, Sea of Japan). The life cycle was experimentally reproduced for the first time,
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Furcocercariae, of the trematodes from the family Diplostomidae, were found in freshwater snails—Radix auricularia, which were collected in a reservoir located on Popov Island (Peter the Great Bay, Sea of Japan). The life cycle was experimentally reproduced for the first time, while morphometric data for the development stages were studied and described for the newly discovered trematode. Moreover, molecular data for nuclear and mitochondrial markers were also obtained. It was determined that the morphometric characteristics of the trematode coincided with the species Diplostomum cf. vanelli, the molecular data analysis validates the species independence. Furthermore, the study highlights the issue of species identification in the Diplostomum genus.
Full article
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